OBO Foundry dashboard analysis¶

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/tmp/ipykernel_532/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           3
unknown                  2
OWL Functional Syntax    1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 4 5203.166667 5941.434992 0.0 572.00 3820.0 7420.50 15469.0
SubClassOf 4 835.500000 775.682345 0.0 129.50 829.0 1527.75 1698.0
Declaration 4 790.333333 727.231646 0.0 132.75 871.5 1226.25 1768.0
DisjointClasses 3 14.333333 17.420295 0.0 0.00 9.5 23.50 42.0
TransitiveObjectProperty 3 3.833333 4.262237 0.0 0.00 3.5 7.00 9.0
EquivalentClasses 2 4.333333 8.041559 0.0 0.00 0.0 4.50 20.0
IrrefexiveObjectProperty 2 0.833333 1.602082 0.0 0.00 0.0 0.75 4.0
InverseObjectProperties 2 10.000000 15.697133 0.0 0.00 0.0 19.50 34.0
FunctionalObjectProperty 2 1.666667 2.658320 0.0 0.00 0.0 3.00 6.0
EquivalentObjectProperties 2 3.333333 6.801961 0.0 0.00 0.0 2.25 17.0
SubPropertyChainOf 2 2.666667 6.055301 0.0 0.00 0.0 0.75 15.0
SubObjectPropertyOf 2 30.000000 46.475800 0.0 0.00 0.0 67.50 90.0
ObjectPropertyRange 2 21.833333 36.454995 0.0 0.00 0.0 33.00 87.0
SymmetricObjectProperty 2 1.166667 2.401388 0.0 0.00 0.0 0.75 6.0
ClassAssertion 2 3.333333 7.685484 0.0 0.00 0.0 0.75 19.0
SubAnnotationPropertyOf 2 4.333333 7.711463 0.0 0.00 0.0 5.25 19.0
ObjectPropertyDomain 2 24.000000 39.074288 0.0 0.00 0.0 39.75 91.0
AsymmetricObjectProperty 1 1.000000 2.449490 0.0 0.00 0.0 0.00 6.0
SubDataPropertyOf 1 1.833333 4.490731 0.0 0.00 0.0 0.00 11.0
FunctionalDataProperty 1 1.000000 2.449490 0.0 0.00 0.0 0.00 6.0
ObjectPropertyAssertion 1 0.333333 0.816497 0.0 0.00 0.0 0.00 2.0
DifferentIndividuals 1 0.333333 0.816497 0.0 0.00 0.0 0.00 2.0
DataPropertyRange 1 4.000000 9.797959 0.0 0.00 0.0 0.00 24.0
DataPropertyDomain 1 1.833333 4.490731 0.0 0.00 0.0 0.00 11.0
AnnotationPropertyRangeOf 1 0.500000 1.224745 0.0 0.00 0.0 0.00 3.0
AnnotationPropertyDomain 1 0.166667 0.408248 0.0 0.00 0.0 0.00 1.0
InverseFunctionalObjectProperty 1 0.333333 0.816497 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 4 2443.000000 2256.168345 0.0 382.75 2465.0 4383.00 5017.0
ObjectSomeValuesFrom 3 125.333333 265.986215 0.0 0.00 6.0 59.25 665.0
ObjectAllValuesFrom 2 6.500000 13.202273 0.0 0.00 0.0 4.50 33.0
ObjectComplementOf 2 5.666667 12.027746 0.0 0.00 0.0 3.00 30.0
ObjectExactCardinality 2 0.333333 0.516398 0.0 0.00 0.0 0.75 1.0
ObjectIntersectionOf 2 7.666667 12.027746 0.0 0.00 0.0 15.00 26.0
ObjectMinCardinality 2 1.166667 2.401388 0.0 0.00 0.0 0.75 6.0
ObjectUnionOf 2 8.500000 16.801786 0.0 0.00 0.0 6.75 42.0
DataExactCardinality 1 1.000000 2.449490 0.0 0.00 0.0 0.00 6.0
DataMinCardinality 1 0.166667 0.408248 0.0 0.00 0.0 0.00 1.0
DataSomeValuesFrom 1 4.333333 10.614456 0.0 0.00 0.0 0.00 26.0
ObjectMaxCardinality 1 0.166667 0.408248 0.0 0.00 0.0 0.00 1.0
ObjectOneOf 1 0.500000 1.224745 0.0 0.00 0.0 0.00 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
2 ngbo 0.426 0.853 0.0
1 mcro 0.386 0.771 0.0
0 bpdo 0.334 0.667 0.0
5 vario 0.155 0.311 0.0
3 scho 0.000 0.000 0.0
4 t4fs 0.000 0.000 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 6.0 0.216833 0.191809 0.0 0.03875 0.2445 0.373 0.426
score_dash 6.0 0.433667 0.383473 0.0 0.07775 0.4890 0.745 0.853
score_impact 6.0 0.000000 0.000000 0.0 0.00000 0.0000 0.000 0.000

OBO dependency graph